PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2748
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 420aa    MW: 48492.3 Da    PI: 6.5349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2748genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.83.4e-29104189187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r++++++++++++k+plW+evs+ m+e+ g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Gh_D05G2748 104 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMAEGyGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFKQLEA 189
                  8*************************************76559***************************97..66678*******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.84197162IPR017877Myb-like domain
PfamPF138371.7E-20103190No hitNo description
CDDcd122031.41E-19103169No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEMGDQYGLP DFQRLLTRRT HFPASLLPQP SESPYLAHHR NMAPSPPPYH EPPYVLSNGD  60
IAMPSGLLRF NTTGATGFTA EASASAAVGG GGWSLGNIDC GNSRWPRQET LTLLEIRSRL  120
DSKFKEANQK GPLWDEVSRI MAEGYGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKN  180
YRFFKQLEAI YGETSNQSSV PETNNINTVP SNLPEKYHES MQEQKMSESL GFSDPEFEAS  240
SSEKMNDDEC ELSGIASMVN QMGVKKGWKT KVKDFVDAQM KRLIDSQDVW MERMLKVIEE  300
KEKERVLREE EWRRQEAARF DKEHELWVKE RAWIEARDAS LMAALRTLRP LTAKTQNEIN  360
ANRWTEHEIL ERRLQENGYS TRQSTWEDIE AKMVNLGYGY EHEANNAECY KKRKEDYLSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.213290.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3950751e-117GQ395075.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2098 SSR marker DPL0591 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448079.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A0D2TUB60.0A0A0D2TUB6_G
STRINGPOPTR_0008s02580.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.16e-78Trihelix family protein